Hi,
If the top coat in green is as good as it looks in the photos I would be reluctant to spend time and money removing it just because of the issue inside under the carpets.
From what I can see in the pictures I would just stick to cleaning it up as best you can, removing the rust, and liberally drowning what is left in the Xtrol product, particularly the bare metal areas you create and places where the Xtrol can seep in and prevent further rusting like the seams and some hard to get places. You could clean up the inside with some paint stripper on the old yellow paint or get a mobile soda blaster to visit and tape up the green and let them clean up the insides.
I would suggest just making up strips of flat or folded metal for patching over the areas you have pictured rather than trying to replace whole panels, I don't think your Moke is that far gone by a long way to need new panels. But whoever you have coming to visit may have different ideas. There is a post froma few years ago now that shows the type patches you can make up, but basically it is 1.2mm steel in strips that is folded at about 60 degrees to match the floor to the sidewalls with a bit of overlap so you are welding on to solid metal.
I had reason to have a repair checked by a Vicorads Engineer/Inspector a few years ago and he said a patch on top and bottom was a okay way to do the repairs along the floor.
The Xtrol can interfere with welding it might need to be cleaned off where the welding needs to be done when the time comes. Xtrol also can react with strong solvent paints, even when it dry, so test a small area first when painting over it.
I have used the Impact Black product and it is essentially black enamel paint mixed with Xtroll, I am sure the supplier will say it is more but you can use Xtrol as a thinner in normal black paint so I suspect that is all it is. However it will take a few days, even a week, to dry hard so plan ahead and don't be in a rush. I used it on subframes and running gear.
Terry